from 28 settembre 2026 to 2 ottobre 2026
Department of Agricultural Sciences of the University of Napoli Federico II, Portici, Italy
Europe/Rome timezone

AI-Driven Virtual Screening of Lemna minor Phenolic Compounds in the Search for Novel Glycemic Control Agents

01 ott 2026, 10:15
15m
Sala Cinese (Department of Agricultural Sciences of the University of Napoli Federico II, Portici, Italy)

Sala Cinese

Department of Agricultural Sciences of the University of Napoli Federico II, Portici, Italy

Piazza Carlo di Borbone, 1, 80055, Portici (NA), Italia

Speaker

Mrs. Felipe Alves (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal/2Nutrition and Bromatology Group, Department of Analytical Chemistry and Food Science, Instituto de Agroecoloxía e Alimentación (IAA)—CITEXVI, Universidade de Vigo, 36310 Vigo, Spain)

Description

The protein tyrosine phosphatase 1B (PTP1B; EC 3.1.3.48), encoded by the PTPN1 gene, dephosphorylates the activated insulin receptor and IRS-1, acting as a negative regulator of insulin and leptin. PTP1B knockout mice, which are more insulin sensitive and resistant to diet-induced obesity, genetically validate PTP1B as a dual target for type 2 diabetes and obesity. However, no inhibitor has made it to clinical trials. We applied an integrated and phased flow, with prior validation, to the 53 phenolic compounds of Lemna minor, found in literature and hosted in the LMW Database against PTP1B (PDB 2QBS): (1) validation by redocking of the co-crystallized inhibitor; (2) molecular docking (AutoDock Vina) [4]; (3) consensus by second scoring function (Vinardo) and by machine learning (RF-Score); (4) AI co-folding with confidence metric (Boltz-2); and (5) internal control with cross-validation in the literature. Lemna minor was rich in PTP1B ligands (about two-thirds of the phenolics showed a strong predicted interaction). Flavone luteolin stood out as a lead in all criteria (docking −9.14 kcal/mol; best flavonoid by affinity; ipTM 0.90), corroborated by literature: luteolin derivatives inhibit PTP1B (luteolin-7-diglucuronide, IC50 = 2.10 μM); quercetin is a reference inhibitor of aldose reductase (IC50 = 6.6 μM); and apigenin inhibits α-glucosidase (IC50 = 10.5 μM). Lemna minor extracts emerge as multi-component, multitarget antidiabetic candidates, with a solid basis for subsequent in vitro experimental confirmation.

Keywords

Extract;PTP1B;luteolin;flavonoids;diabetes;docking

References

[1] Elchebly, M. et al. (1999). Increased insulin sensitivity and obesity resistance in mice lacking the
protein tyrosine phosphatase-1B gene. Science, 283(5407), 1544–1548.
https://doi.org/10.1126/science.283.5407.1544
[2] Klaman, L. D. et al. (2000). Increased energy expenditure, decreased adiposity, and tissue-specific insulin sensitivity in protein-tyrosine phosphatase 1B-deficient mice. Molecular and Cellular Biology,
20(15), 5479–5489. https://doi.org/10.1128/MCB.20.15.5479-5489.2000
[3] Combs, A. P. (2010). Recent advances in the discovery of competitive protein tyrosine phosphatase 1B
inhibitors for the treatment of diabetes, obesity, and cancer. Journal of Medicinal Chemistry, 53(6),
2333–2344.
[4] Trott, O., & Olson, A. J. (2010). AutoDock Vina: Improving the speed and accuracy of docking with a
new scoring function, efficient optimization, and multithreading. Journal of Computational Chemistry,
31(2), 455–461. https://doi.org/10.1002/jcc.21334 https://doi.org/10.1021/jm901090b
[5] Wohlwend, J. et al. (2024). Boltz-1: Democratizing biomolecular interaction modeling. bioRxiv.
https://doi.org/10.1101/2024.11.19.624167
[6] Passaro, S. et al. (2025). Boltz-2: Towards accurate and efficient binding affinity prediction. bioRxiv.
https://doi.org/10.1101/2025.06.14.659707

Corresponding author email felipemacedo.alves20@gmail.com
Scientific Session Applications

Primary authors

Mrs. Felipe Alves (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal/2Nutrition and Bromatology Group, Department of Analytical Chemistry and Food Science, Instituto de Agroecoloxía e Alimentación (IAA)—CITEXVI, Universidade de Vigo, 36310 Vigo, Spain) Mrs. Carlos Seite (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal) Mrs. Rui Abreu (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal) Dr. Manuel Feliciano (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal) Dr. Márcio Carocho (1CIMO, LA SusTEC, Instituto Politécnico de Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal) Dr. Miguel Lage (2Nutrition and Bromatology Group, Department of Analytical Chemistry and Food Science, Instituto de Agroecoloxía e Alimentación (IAA)—CITEXVI, Universidade de Vigo, 36310 Vigo, Spain)

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